Hello - Thank you for your patience while we gathered input from our in-house methylation expert, Venkat. Here is the feedback:
I am not exactly sure what type of Methylation the Student has asked for: DNA, Protein or specific Histone Modification. We have two DNA Methylation ENCODE tracks: HAIB Methyl-seq and HAIB Methyl27. In addition we have a few tracks that look at specific methylation of Histone Markers: Broad Histone, UW Histone, ENCODE Regulation Super Track. Within the Regulation Super Track, we have two methylation modification tracks: Enhancer H3K4Me1 and Promoter H3K4Me3.None of these tracks have data specific for any given tissue, however they contain methylation data for specific Cell Lines. Each Cell Line was derived from some tissue, but do not represent any tissue in native form. Each configuration page contains a matrix of Cell Lines that are subtracks within the Methylation track. To find further information of each Cell Line, the user can click the specific Cell Line Hyperlink that will display information that UCSC has on that particular Cell Line. To find further information about specific Tissue derivative, the Browser links to outside resources (i.e. Vendor Information and Ontology Services). We hope this helps answer the question! Please feel free to contact the mailing list support team again if you would like more assistance. Warm regards, Jen UCSC Genome Browser Support On 9/6/10 1:00 PM, qcshare wrote: > Dear Professor, > I want to know the genome methylation information in different tissues and > compare their methylation level. > Could you please give me some advices how can I use the UCSC to complish > this aim? > I have some liver methylation data, can I get other tissues, such as sperm > etc., methylation data from the UCSC? > I am very sorry that I made this kind of question because I am a beginner. > Thank you for your reply. > > Best Wishes. > > Student. > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
