Hi Mei, Upload your coordinates as BED custom track (http://genome.ucsc.edu/goldenPath/help/customTrack.html). Then go to the table browser, select your custom track and perform an intersection with the gene track of your choice to retrieve the gene names.
I hope this information is helpful. Please feel free to contact the mail list again if you require further assistance. Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group On 9/14/10 9:46 AM, Mei Zhu wrote: > Hi > > I am trying to retrieve the gene names for an exome bed file using > UCSC table browser, but the input bed file is limited to 1000 lines > and my file is over 150k lines. Is there a easy way to get this > work? Thanks very much. > > Regards > > Mei > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
