Hi Qing, You can obtain this information using our Table Browser tool.
Click on "Tables" on the blue bar on the top of the main page and make the following selections: clade: Mammal genome: Human assembly: Feb. 2009 (GRCh37/hg19) group: Genes and Gene Prediction Tracks track: RefSeq Genes table: refGene region: genome (or select "position" & enter your location of interest) output format: sequenece output file: enter the name you would like the output file to have file type returned: plain text Click "get output". Select "genomic" and click "submit". Select the Options you would like and uncheck any you would not like as part of your results. Since you would like the 3'UTR sequence, I would recommend checking 3' UTR Exons. If you only want 3' UTRs and don't want anything else, uncheck 5' UTR Exons, CDS Exons and Introns. Select any other options you like and Click "get sequence." For more information about using the Table Browser see "Using the Table Browser" by scrolling down past the Table Browser form. It provides brief descriptions of the Table Browser controls. You can also see the "User's Guide" at http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html. I hope this information is helpful. Please don't hesitate to contact the mail list again if you have any further questions. Katrina Learned UCSC Genome Bioinformatics Group Qing Lu wrote, On 09/16/10 19:35: > Dear Mr. Smith, > > I intend to fetch all 3'utr sequence from database with information of > gene name, RefSeq number, chromsome location, sequence etc. How can I > get all these things in a single table and get export into txt file? > Thank you so much! > > Regards, > Qing > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
