I am trying to get the gene annotations for X. tropicalis from here: http://genome.ucsc.edu/cgi-bin/hgTables?hgsid=170244280&clade=vertebrate&org=X.+tropicalis&db=xenTro2&hgta_group=genes&hgta_track=ensGene&hgta_table=0&hgta_regionType=genome&position=scaffold_27%3A565941-578374&hgta_outputType=gff&hgta_outFileName=xenTro2.JGI4.1.Aug2005.Ensembl.gtf.gz
I've tried downloading several versions of the GTF file (Ensembl Genes, RefSeq Genes, and TransMap mRNA) and in all cases the file appears to be truncated and ends with the lines: --------------------------------------------------------------------------- Allocated too much memory - more than 6,442,450,941 bytes (6,442,678,139) --------------------------------------------------------------------------- This happens whether I download plain text or gzip, so it isn't a problem with the decompression. Does anyone know where I can get the complete GTF file, and if there is someone else who should be notified about this? Thanks. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
