Hello Irwin, There appears to be a bug in the Table Browser. We are looking into what might be causing it. Thank you for reporting it! I will alert you when we get it fixed.
-- Brooke Rhead UCSC Genome Bioinformatics Group Irwin Jungreis wrote on 9/27/10 12:28 PM: > I am trying to get the gene annotations for X. tropicalis from here: > http://genome.ucsc.edu/cgi-bin/hgTables?hgsid=170244280&clade=vertebrate&org=X.+tropicalis&db=xenTro2&hgta_group=genes&hgta_track=ensGene&hgta_table=0&hgta_regionType=genome&position=scaffold_27%3A565941-578374&hgta_outputType=gff&hgta_outFileName=xenTro2.JGI4.1.Aug2005.Ensembl.gtf.gz > > I've tried downloading several versions of the GTF file (Ensembl > Genes, RefSeq Genes, and TransMap mRNA) and in all cases the file > appears to be truncated and ends with the lines: > > --------------------------------------------------------------------------- > Allocated too much memory - more than 6,442,450,941 bytes > (6,442,678,139) > --------------------------------------------------------------------------- > > This happens whether I download plain text or gzip, so it isn't a > problem with the decompression. > > Does anyone know where I can get the complete GTF file, and if there > is someone else who should be notified about this? > > Thanks. > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
