Hello! I would like to extract promoter regions of various sizes from different vertebrates. I am aware that you provide the upstreamXXXX.fa.gz files but I would like to have them repeatmasked.
I decided to extract my data directly from the chromosomes using refFlat.txt files. I have noticed that some organisms have a small number of entries. Some organisms like the Panda do not have refFlat.txt at all. Would it be safe to approximate promoter regions with xenoRefFlat? Regards, -- Arnoldo J. Muller-Molina Computational Biology Group Max Planck Institute for Molecular Biomedicine _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
