I understand that. Our lab has a local installation of a UCSC Genome Browser, so I would have access to those database resources.
Is there a way to issue (for example) a "wget" or "curl" command, packaging the requisite POST and GET variables in an HTTP request to hgGenome, so as to automate figure generation? -Alex On Oct 5, 2010, at 3:43 PM, Galt Barber wrote: > > The cgi programs are typically intended to be run inside of apache > and they use additional resources such as databases and the cart > and various binary data formats. > > -Galt > > ----- Original Message ----- > From: "Alex Reynolds" <[email protected]> > To: [email protected] > Sent: Tuesday, October 5, 2010 1:18:40 PM GMT -08:00 US/Canada Pacific > Subject: [Genome] Automating hgGenome > > I am making genome-wide figures using the Genome Graphs tool of the UCSC > browser. This looks and works great. > > However, as I have a number of these to make, I'd like to try to automate the > process. > > I downloaded the hgGenome cgi-bin binary via instructions at > http://genome.ucsc.edu/admin/jk-install.html, but I'm not sure what arguments > it takes, or if I can use it as a command-line tool to automate making > figures. > > Is anyone familiar with hgGenome or its use on the command line? > > Thanks, > Alex _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
