Hello Manisha, Please see these two previously answered mailing list questions that describe use of OligoMatch and other restriction enzyme related resources on our site:
https://lists.soe.ucsc.edu/pipermail/genome/2006-October/011861.html https://lists.soe.ucsc.edu/pipermail/genome/2008-March/015954.html Hopefully this information was helpful and answers your question. If you have further questions or require clarification feel free to contact the mailing list at [email protected]. Regards, Pauline Fujita UCSC Genome Bioinformatics Group http://genome.ucsc.edu On 10/06/10 07:53, Brahmachary, Manisha wrote: > Hello, > > > > I apologize for some ambiguities in my previous email. > > > > To be more clear, > > > > I am looking for AluI restriction enzyme sites (genomic start and the > end coordinates,chromosome) across the whole human genome (hg18). Am I > right to understand that the OligoMatch program can help me do it. Is > there any other way (ie. Download an already existing .BED file) or > program in UCSC that can do it? > > > > Thanks > > Manisha > > > > Department of Genetics and Genomic Sciences > > Prof. Andrew J. SHARP laboratory > > Mount Sinai School of Medicine > > Icahn Medical Institute, Room L14-02 > > 1425 Madison Avenue, Box 1498 > > NY-10029, NEW-YORK, USA > > Phone:+1-212-659-9777 > > Email:[email protected] > > > > > > > > From: Brahmachary, Manisha > Sent: Wednesday, October 06, 2010 10:43 AM > To: '[email protected]' > Subject: Query about restriction enzyme sites > > > > Hello, > > > > I am trying to get the genomic locations for all restriction enzymes > sites for the human genome for a single allele in hg18.Am I right to > understand that the OligoMatch program can help me do it. Is there any > other way or program in UCSC that can do it? Also, where can I download > the entire human genome sequence for one allele? > > > > Thanks > > > > Manisha > > Department of Genetics and Genomic Sciences > > Prof. Andrew J. SHARP laboratory > > Mount Sinai School of Medicine > > Icahn Medical Institute, Room L14-02 > > 1425 Madison Avenue, Box 1498 > > NY-10029, NEW-YORK, USA > > Phone:+1-212-659-9777 > > Email:[email protected] > > > > > > > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
