Hi Hiram, Good morning!
We want upload our GTF format data to hg19 of our mirror genome browser, So far, there is not a corresponding loader for GTF data uploading. This is piece GTF data the following: ============================================================================== $ head -3 gencode_v3c.bed chr1 HAVANA gene 11874 14412 . + . gene_id "ENSG00000223972"; transcript_id "ENSG00000223972"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RP11-34P13.1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RP11-34P13.1"; level 2; havana_gene "OTTHUMG00000000961"; chr1 ENSEMBL transcript 11874 14412 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000456328"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RP11-34P13.1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RP11-34P13.1-201"; level 3; havana_gene "OTTHUMG00000000961"; chr1 ENSEMBL exon 11874 12227 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000456328"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RP11-34P13.1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RP11-34P13.1-201"; level 3; havana_gene "OTTHUMG00000000961"; ============================================================================== Please give advice how to do this Thanks & Regards Wuqi _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
