Good Morning: The Ensembl gene data is already loaded into hg19. You can pick up the table dumps for the tables named: ensGene ensGtp and ensPep from the hg19 downloads.
If you want to load this data as a custom track you can use the GTF format as described: http://genome.ucsc.edu/goldenPath/help/customTrack.html#GTF Your data may function as it already is formatted. --Hiram WANG Wuqi wrote: > Hi Hiram, > > Good morning! > > We want upload our GTF format data to hg19 of our mirror genome browser, > So far, there is not a corresponding loader for GTF data uploading. > > This is piece GTF data the following: > ============================================================================== > $ head -3 gencode_v3c.bed > chr1 HAVANA gene 11874 14412 . + . gene_id > "ENSG00000223972"; transcript_id "ENSG00000223972"; gene_type > "protein_coding"; gene_status "KNOWN"; gene_name "RP11-34P13.1"; > transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name > "RP11-34P13.1"; level 2; havana_gene "OTTHUMG00000000961"; > chr1 ENSEMBL transcript 11874 14412 . + . > gene_id "ENSG00000223972"; transcript_id "ENST00000456328"; gene_type > "protein_coding"; gene_status "KNOWN"; gene_name "RP11-34P13.1"; > transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name > "RP11-34P13.1-201"; level 3; havana_gene "OTTHUMG00000000961"; > chr1 ENSEMBL exon 11874 12227 . + . gene_id > "ENSG00000223972"; transcript_id "ENST00000456328"; gene_type > "protein_coding"; gene_status "KNOWN"; gene_name "RP11-34P13.1"; > transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name > "RP11-34P13.1-201"; level 3; havana_gene "OTTHUMG00000000961"; > > ============================================================================== > > > Please give advice how to do this > > > Thanks & Regards > > Wuqi _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
