Hello Jennifer,
In the table browser after selecting your assembly of interest select:
group: Genes and Gene Prediction Tracks
track: UCSC Genes
table: knownGene
output format: "selected fields from primary and related tables"
Once you click on "get output" this will take you to a menu where you
can specify which fields you want to retrieve from your tables of
interest. Now under "select Fields from hg19.knownGene" select name,
chrom, txStart/txEnd (or cdsStart/cdsEnd), and in the hg19.kgXref
section select geneSymbol. Then check the box to the left of
"knownToLocusLink" in the "Linked Tables" section and click "Allow
Selection From Checked Tables".
Now select 'value' from the hg19.knownToLocusLink fields section (the
locus link ID is the Entrez ID) and click "get output".
Best regards,
Pauline Fujita
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu
On 10/20/10 13:25, Barb, Jennifer (NIH/CIT) [E] wrote:
> Hello,
> Is there a way to download from the Genome Table browser the following:
> Entrez Gene IDs with gene symbol, gene title, gene ID, and genomic
> coordinates of start and stop for each ID?
> Thank you,
> Jennifer
> _______________________________________________
> Genome maillist - [email protected]
> https://lists.soe.ucsc.edu/mailman/listinfo/genome
_______________________________________________
Genome maillist - [email protected]
https://lists.soe.ucsc.edu/mailman/listinfo/genome
