Dear Genome Bioinformatics Group,
I downloaded the 'phyloP44wayPrimate' database from UCSC
(http://hgdownload.cse.ucsc.edu/goldenPath/hg18/phyloP44way/primates)
at Mar. 2010. I found many values, for the exactly same position, are
inconsistent with those retrieved using 'Table Browser. I'm using the
same genome assembly and the inconsistence is not like a mathematical
approach. Taking region chr1:867477-867494 for example, the
differences are notable at many positions.
Look forward to your kindly explanation. Thank you!
The values from local database were:
867477 0.531
867478 0.511
867479 0.531
867480 0.511
867481 0.564
867482 0.511
867483 0.564
867484 0.531
867485 0.531
867486 0.527
867487 0.564
867488 0.527
867489 0.531
867490 0.531
867491 0.531
867492 0.531
867493 0.527
867494 0.564
While retrieving from 'Table Browser', the values were:
867477 0.506945
867478 0.506945
867479 0.506945
867480 0.506945
867481 0.564
867482 0.506945
867483 0.564
867484 0.506945
867485 0.506945
867486 0.506945
867487 0.564
867488 0.506945
867489 0.506945
867490 0.506945
867491 0.506945
867492 0.506945
867493 0.506945
867494 0.564
*********************************
Hua Gao, Ph.D candidata
Center for Bioinformatics
College of Life Sciences
Peking University
Beijing, P.R. China, 100871
Email: [email protected]
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