Hi Hui, Looking at the "user supplied" track, it looks as though the browser interpreted your 4th column as a name rather than as the data value (which is typical for BED data: http://genome.ucsc.edu/goldenPath/help/customTrack.html#BED). Did you include type=bedGraph in your track line?
Also, if you need to share a browser image with us, the best way to do this is with sessions, as the hgsid in the URL does expire after a certain period of time. This guide should help you get started: http://genome.ucsc.edu/goldenPath/help/hgSessionHelp.html I hope this information is helpful. Please feel free to contact the mail list again if you require further assistance. Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group On 11/9/10 12:32 PM, Kou, Hui wrote: > Dear UCSC support, > > I was trying to load my data through custom track. Since my data > contains snp position and one data value, I chose bedGraph data format. I > want to see the data curve like the one I send in the attached file. > > My data format: chr#, position, position, data count. I want to use the > data count value as Y axis. > > The current link is: > > http://genome.ucsc.edu/cgi-bin/hgTracks?insideX=118&revCmplDisp=0&hgsid=172279862&hgt_doJsCommand=&hgt.out3=10x&position=chr7%3A105941575-158821424&hgtgroup_user_close=0&hgtgroup_map_close=0&hgtgroup_phenDis_close=1&hgtgroup_genes_close=0&hgtgroup_rna_close=0&hgtgroup_expression_close=0&hgtgroup_regulation_close=0&hgtgroup_compGeno_close=0&hgtgroup_neandertal_close=0&hgtgroup_varRep_close=0&hgtgroup_encodeGenes_close=0&hgtgroup_encodeTxLevels_close=0&hgtgroup_encodeChip_close=0&hgtgroup_encodeChrom_close=0&hgtgroup_encodeCompAndVar_close=0 > > The graph does not look right or the one I want. > > can you give me any idea how to get my desired graph? > > > thanks > > Hui > > > > > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
