Hi Michael, I have a few questions that I hope will help trouble-shoot this issue:
Do you get an error when you try to upload the new file? If not, after uploading, do you get a screen that is titled, "Data Upload Complete" with an OK button to click? After clicking OK, when you are in the main genome graphs page, if you click on the drop-down menu next to "graph" do you just see the original data set? You should see all the files you've uploaded in this list, and you should be able to select the new data set from this list and see it in the genome graphs. Are you using Genome Graphs on a mirror site, or are you using http://genome.ucsc.edu/cgi-bin/hgGenome? Thanks, Katrina Learned UCSC Genome Bioinformatics Group On 11/05/2010 01:24 PM, Michael J Yarus wrote: > Help, > > I'm still having the same problem; no matter how I delete data (for > example, from "manage custom tracks"), and no matter what I upload, what > is displayed remains the first data file I uploaded, and not the current > *.bed. This is true despite the fact that all user tracks disappear when > "deleted". How do I get Graphs and the Browser to accept new data? > > Very puzzling, > > > -------- Original Message -------- > Subject: Re: [Genome-mirror] I'm mapping and characterizing genome > RNA-seq data on the UCSC genome grapher and Browser > Date: Fri, 05 Nov 2010 08:25:40 -0700 > From: Katrina Learned<[email protected]> > To: Michael J Yarus<[email protected]> > CC: [email protected] > > Hi Michael, > > Click on "Genomes" in the top dark blue bar, click the "manage custom > tracks" button, select the check box next to the data you would like to > delete and click the "delete" button. A few other ways of deleting your > data sets are described in the "Deleting Data" section of this page: > http://genome.ucsc.edu/goldenPath/help/hgGenomeHelp.html#DataSets. > > You should be able to upload more than one set of data. As the note > warns on the genome graphs "upload" page, if you are uploading more than > one data set please make sure you give them different names. Only the > most recent data set of a given name is kept. Once you have your data > sets loaded, you should be able to compare them by going to the > "configure" button and increasing the "lines of graphs:" to the number > of data sets you'd like to see at once. Click submit. Now you should be > able to select different data sets in the different graph lines and see > them displayed together. > > In the future, please direct your questions to the genome mailing list > at [email protected]. This genome-mirror list is reserved for > questions about genome browser mirrors. > > Katrina Learned > UCSC Genome Bioinformatics Group > > > Michael J Yarus wrote, On 11/05/10 07:48: > >> Things are going well and getting interesting, but I cannot get Graph to >> give up the first data I sent it. It will not accept a second *.bed for >> comparison, and will not look at new, unseen data at all. Upload goes >> well, but new data never appears in the genome graph. I have read the >> instructions, even tried deleting my ucsc cookie, but nothing helps. Do >> these symptoms suggest a solution to you? >> >> thanks& cheers, >> >> > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
