Hello Michael, You will need to determine if your file system can have immense files. This chr1.maf file by itself is 14 Gb.
You should also check to see what version of rsync you are using. It should say it can manage 64-bit files in its version message: $ rsync --version Capabilities: 64-bit files, 64-bit inums, 64-bit timestamps, 64-bit long ints, socketpairs, hardlinks, symlinks, IPv6, batchfiles, inplace, append, ACLs, xattrs, iconv, no symtimes Best regards, Pauline Fujita UCSC Genome Bioinformatics Group http://genome.ucsc.edu On 12/07/10 17:12, Michael Molstad wrote: > Hello Hiram, > Thank you for your reply to my last inquiry. Your response was very helpful. > Currently I am having a problem retrieving the gbdb/hg19/ files. I have > download about 90% of the files, but since last Friday, the rsync has failed > while trying to retrieve the multiz46way/maf/chr1.maf file. Below is the > error result: > [r...@localhost ~]# rsync -avzP --delete --max-delete=20 > rsync://hgdownload.cse.ucsc.edu/gbdb/hg19/ /BiO/gbdb/hg19/receiving file list > ... 1075 files to considermultiz46way/maf/ multiz46way/maf/chr1.mafrsync: > connection unexpectedly closed (742620 bytes received so far) [receiver]rsync > error: error in rsync protocol data stream (code 12) at io.c(463) > [receiver=2.6.8]rsync: connection unexpectedly closed (32901 bytes received > so far) [generator]rsync error: error in rsync protocol data stream (code 12) > at io.c(463) [generator=2.6.8] > I have tried multiple times with the same result. Do you have any > suggestions. I have used rsync to retrieve all the other files I need for > the mirror without any problems. I noticed that when I ran rsync on Monday, > that additional hg19/patch files were present. Will I have a problem if the > database files I previously downloaded are older than the gbdb/ files I am > currently trying to download? Any help would be greatly appreciated. > Thanks, > Michael > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
