Hi Rogier, Thank you for the more detailed explanation. I was able to reproduce what you are seeing. It looks like the problem is that the filter needs the position you enter to be formatted just so. Instead of:
chromosome 12 Start 1 end 55,000,000 Try entering: chromosome chr12 Start 1 end 55000000 and you should see some results. I will make a suggestion to our engineers to either make the filter a little more accepting of little format differences or display an example of the correct format on the filter page. If you have further questions, please feel free to contact us again at [email protected]. -- Brooke Rhead UCSC Genome Bioinformatics Group On 12/13/10 14:57, R. Kersseboom wrote: > Hi Katrina, > > Sorry for the confusion I sent the email from my girlfriends laptop... > > At the starting page of 'genesorter' I filled in: > genome: human > assembly: hg19 > search: STX11 > Sort by Expression (GNF Atlas2) > Display 50 > > Went on to switch the filter on: > Genome position > chromosome 12 > Start 1 bp > end 55,000,000 bp > > After submitting this query nothing shows up although it should show a few > genes (I checked manually). > > I have tried both firefox and internet explorer as browsers but both gave > the same result. > > Thnx for looking into this issue. > > Rogier Kersseboom > > > > -------------------------- > R. Kersseboom, MD, PhD > > Department of Clinical Genetics > Erasmus MC Rotterdam > Dr. Molewaterplein 50 > 3015 GE Rotterdam > The Netherlands > > Phone: +31 (0)10 7036915 > +31 (0)10 7038380 > Email: [email protected] > > >> Zegt deze email je iets ? Ik snap hier niets van XXX >> >> >> ----- Oorspronkelijk bericht ----- >> Van:Katrina Learned >> Aan:Dominiek Despriet >> Onderwerp:Re: [Genome] (no subject) >> >> >> Hi Dominiek, >> >> Thank you for your email. So that we can better understand the issue, >> would you please provide us with some additional information such as >> what you've entered in the search field and what you have selected as >> the genome, assembly and sort by. Also, please let us know what about >> the displayed is incorrect. >> >> We look forward to hearing back from you so that we can look into this >> matter. >> >> Thank you, >> >> Katrina Learned >> UCSC Genome Bioinformatics Group >> >> Dominiek Despriet wrote, On 12/10/10 13:28: >>> When using gene sorter and selecting genes located on a particular >>> chromosome it doesn't show the correct list. I guess this is a bug in >>> the >>> program >>> >>> >>> >>> Kind regards >>> >>> >>> >>> Rogier Kersseboom >>> >>> _______________________________________________ >>> Genome maillist - [email protected] >>> https://lists.soe.ucsc.edu/mailman/listinfo/genome >>> > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
