Hi Xiaolu, When downloading large amounts of data from the browser we recommend using either our downloads page (http://hgdownload.cse.ucsc.edu/downloads.html), which contains all tables present in our database in addition to other useful information in flat files, or our table browser (http://genome.ucsc.edu/cgi-bin/hgTables). For your purposes, it seems like the table browser would be more useful since you only want information on a select few items.
First go to the table browser and select your assembly and track of interest from the pull-down menus. Next, either paste or upload the your list of identifiers/names/accessions. Finally, choose your output format, enter a file name if you want to download the results as a file, and click "get output". More information on how to use our table browser can be found in our tutorial (http://www.openhelix.com/downloads/ucsc/ucsc_home.shtml), user guide (http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html) and help pages (http://genome.ucsc.edu/cgi-bin/hgTables#Help). I hope this information is helpful. Please feel free to contact the mail list again if you require further assistance. Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group On 12/14/10 12:12 PM, Huang, Xiaolu wrote: > Dear bioinformaticians at UCSC, > > We used to access each of your individual webpage for the genomic coordinates > of all human chromosome 21 transcripts automatically with a script. Such the > access does not seem to be available now, is there anyway for us to download > the the genomic coordinates for large number of transcripts (>10000)? > > Thanks! > > Xiaolu > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
