Hi Jon, You can filter the SNP track for just genomic data from the track controls & description page. If you are in the main browser you can get to the track controls and description page by clicking on the blue/grey bar to the left of the track in the main display or by clicking on the track title above its pulldown menu. Here is a link to the hg19 SNP(131) track description and controls page: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=snp131
From this page, you scroll down to the section called, Filter by Attribute. The last group in this section is "Molecule Type;" here unselect "unknown" and "cDNA" so that only "Genomic" in that group is selected. Go back up to the top of the page and click submit. In the browser display, only variants discovered using a genomic template with be displayed. I hope this information is helpful. Please don't hesitate to contact the mail list again if you have any further questions. Katrina Learned UCSC Genome Bioinformatics Group On 12/16/2010 01:15 PM, Jonathan R. Warner wrote: > My gene (RPL3) has many, many SNPs listed, but most are from cDNA > data. Is there any way to filter for GENOMIC data only, which in my > view is likely to be more accurate. > And will such SNPs come with a frequency estimate? > THANKS very much! > > > Best Regards, Jon Warner > > Jonathan R. Warner > Department of Cell Biology > Albert Einstein College of Medicine > 1300 Morris Park Ave. > Bronx, NY 10461 > 718 430 3022 > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
