Good Morning Peter: Please note this information about using the kent source program hgWiggle to extract data from these types of tracks:
http://genomewiki.ucsc.edu/index.php/Using_hgWiggle_without_a_database#Using_the_UCSC_public_MySQL_server You can use our public MySQL database. You would need to fetch the .wib files to have them locally, and you would need to build the hgWiggle binary in the source tree: http://genome-source.cse.ucsc.edu/gitweb/?p=kent.git;a=blob;f=src/product/scripts/kentSrcUpdate.sh http://genome-source.cse.ucsc.edu/gitweb/?p=kent.git;a=blob_plain;f=src/product/README.building.source --Hiram Peter Robinson wrote: > Hi, > > we would like to get the nucleotide specific conservation values (e.g., > phylo20wayPlacental) for specific genomic regions such as transcripts. > We would like to do this locally by making use of some of the UCSC mySQL > tables and files. > > Is the best way to do this to use a table such as phyloP30wayPlacental > and to then go to the *wib files referenced in the "file" field of the > table? Is there a ucsc program to convert these files from binary to > text-based data? > > thanks Peter _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
