Hi D., You might be interested in the "RNA Genes" track (available for the hg18 assembly) or the "sno/miRNA" track (available for the hg18 and hg19 assemblies).
You can use our new Track Search feature to find tracks you are interested in. For instance, if you go to the hg18 assembly (http://genome.ucsc.edu/cgi-bin/hgTracks?clade=mammal&org=Human&db=hg18) and hit the "track search" button, you can search for the term "pre-miRNA" and you will see the "sno/miRNA" track. Click on the track name to see a description of the track. It includes pre-miRNAs. If you search for "ncRNA" you'll find the RNA Genes track, which includes several kinds of non-coding RNA. "Large ncRNAs" are mentioned in the track description. Both of the tracks are in the Table Browser under "Genes and Gene Prediction Tracks", or available via FTP at: ftp://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/wgRna.txt.gz and ftp://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/rnaGene.txt.gz -- Brooke Rhead UCSC Genome Bioinformatics Group Duke wrote on 12/20/10 10:45 AM: > Hi all, > > Anybody knows how I can download pri-miRNA and lncRNA dataset from > either UCSC table and/or FTP site? I dont see those listed neither on > the drop-down list of the Table Browser nor the FTP site. Or if anyone > can recommend me good (most updated and full list) resources, that would > be great enough. > > Thanks so much, > > D. > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
