Hi Brooke, Thanks for your instruction. I did not recognize that there is a *new* "Track Search" feature. This feature is very helpful for me.
Bests, D. On 12/20/10 6:10 PM, Brooke Rhead wrote: > Hi D., > > You might be interested in the "RNA Genes" track (available for the > hg18 assembly) or the "sno/miRNA" track (available for the hg18 and > hg19 assemblies). > > You can use our new Track Search feature to find tracks you are > interested in. For instance, if you go to the hg18 assembly > (http://genome.ucsc.edu/cgi-bin/hgTracks?clade=mammal&org=Human&db=hg18) > and hit the "track search" button, you can search for the term > "pre-miRNA" and you will see the "sno/miRNA" track. Click on the > track name to see a description of the track. It includes pre-miRNAs. > > If you search for "ncRNA" you'll find the RNA Genes track, which > includes several kinds of non-coding RNA. "Large ncRNAs" are > mentioned in the track description. > > Both of the tracks are in the Table Browser under "Genes and Gene > Prediction Tracks", or available via FTP at: > > ftp://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/wgRna.txt.gz > and > ftp://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/rnaGene.txt.gz > > -- > Brooke Rhead > UCSC Genome Bioinformatics Group > > > Duke wrote on 12/20/10 10:45 AM: >> Hi all, >> >> Anybody knows how I can download pri-miRNA and lncRNA dataset from >> either UCSC table and/or FTP site? I dont see those listed neither on >> the drop-down list of the Table Browser nor the FTP site. Or if anyone >> can recommend me good (most updated and full list) resources, that would >> be great enough. >> >> Thanks so much, >> >> D. >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
