Good Evening Xinmin: You can fetch all the teleomere and centromere regions from the gap table file:
$ wget -O /dev/stdout \ 'ftp://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/gap.txt.gz' \ | zcat | grep -i mere | awk '{print $2,$3,$4,$8}' --Hiram ----- Original Message ----- From: "Xinmin Liu" <[email protected]> To: [email protected] Sent: Tuesday, December 28, 2010 1:55:24 PM Subject: [Genome] question about the centromere and telomere hi, why I can not get the full telomere region through the method as: http://www.mail-archive.com/[email protected]/msg01065.html https://lists.soe.ucsc.edu/pipermail/genome/2006-July/011232.html it list only part of telomere region as follows: track name="tb_gap" description="table browser query on gap" visibility=1 url= chr2 242751149 242951149 chr3 0 35000 chr3 199446827 199501827 chr4 191263063 191273063 chr5 0 63000 chr5 180837866 180857866 chr6 0 5000 chr6 170896992 170899992 chr7 0 34000 chr11 0 50000 chr12 0 16000 chr12 132289534 132349534 chr13 114127980 114142980 chr14 106360585 106368585 chr16 88822254 88827254 chr17 78654742 78774742 chr19 0 11000 chr19 63806651 63811651 chr20 0 8000 chr22 49591432 49691432 if possible, can you give me the full region of them? thanks Happy New Year. xinmin _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
