Hello, We are currently preparing dbSNP 132 of the dbSNP track on the hg19 human assembly ready to release to our public site. Presently the data are available on our test site (http://genome-test.cse.ucsc.edu/). You are welcome to look at it on the test site with that caveat that the data have not been through our quality assurance process yet.
Unfortunately we do not provide bulk downloads on the test site and the table you are interested in "snp132" is a very large table. To access this table using the table browser (http://genome-test.cse.ucsc.edu/cgi-bin/hgTables) you will need to limit your query to a list of rsIDs or a region of the genome (querying the entire table will cause the site to time out). Specifically, in the table browser once you have selected hg19 select: group: Variation and Repeats track: SNPs (132) table: snp132 region: specify a region (and/or) identifiers: you can paste a list of rsIDs output: selected fields from primary and related tables Clicking on submit then takes you to a menu where you can choose which fields from the table to include in the output (i.e. "name" and "alleleFreqs"). If you want a bulk download of the whole table and are satisfied with the previous version of this track you can download the table from our public site here: http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/ (see snp131.sql or snp131.txt.gz) Best regards, Pauline Fujita UCSC Genome Bioinformatics Group http://genome.ucsc.edu On 01/05/11 08:20, nipun kakkar wrote: > Hi All > > I was looking for a table containing allele frequencies corresponding to > rsid's for dbsnp. Can anyone help? > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
