Hi Nipun, Our snp131 table doesn't actually contain allele frequency data; we changed our SNP table format to include allele frequencies starting with snp132 (sorry if we didn't make that clear before).
To see the differences between the datasets, you can look at dbSNP's summary page: http://www.ncbi.nlm.nih.gov/projects/SNP/snp_summary.cgi?view+summary=vi#buildStat at the bottom of that page, there is a button to fetch a summary for the previous build (131). Comparing those numbers shows that quite a few new SNPs have been added in 132 (>30M in 132, <24M in 131). I hope this helps you find the data you need. If you have further questions, please feel free to contact us again at [email protected]. -- Brooke Rhead UCSC Genome Bioinformatics Group On 01/10/11 11:15, nipun kakkar wrote: > What is the difference between snp131 which is available right now and > snp132 which will be available?. Can i grab the insertion deletion data from > the snp131 table with confidence for the hg19 genome build. ? > >> Thanks, >> Nipun >> >> >> >> >> > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
