Hi Zhendong,

Actually, there's an easier work-around. If you right-click on the 
browser image and select "view image" you'll get a .png version of the 
browser view.  I don't believe it's as high of quality as the pdf or 
postscript versions, but it will capture the transparent overlays.

- Greg



On 1/11/11 1:31 PM, Mary Goldman wrote:
> Hi Zhendong,
>
> Unfortunately, this is not currently possible in the Genome Browser. We
> recommend taking a picture of the browser window as a work around. Sorry
> we could not be of more help.
>
> Best,
> Mary
> ---------------------
> Mary Goldman
> UCSC Bioinformatics Group
>
>
>
> On 1/11/11 5:18 AM, 肖振东 wrote:
>> Dear ,
>>       The transcription and histone mark displays use a transparent overlay 
>> method of displaying data from a number of cell lines in a single track. The 
>> picture is great in genome browser!  In genome browser, the tracks could be 
>> display in transparent Overlay method, But when download the picture from  
>> PDF/PS link, the picture of the tracks display as  solid Overlay method. How 
>> Could I obtain PDF files of the picture in Transparent overlay mehtod? Thanks
>>
>>    Zhendong
>> _______________________________________________
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