Hey Fernando, We've uploaded the genePredToGtf program to http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/
Thanks for your interest in our tools! Brian On Wed, Jan 12, 2011 at 8:15 AM, Biase, Fernando <[email protected]> wrote: > Hi, > > The problem with the truncated table with GTF format still persists, at least > for btau4 genome. I saw it was addressed a couple of times in this list. > > One suggested solution was: > > "One way would be to use the table browser to export > the file as a BED to Galaxy and then use Galaxy's BED-to-GFT converter. " > > However Galaxy has a BET-to-GFF converter, not a BED-to-GTF converter. > > And the other solution was: > > "Alternatively, you could install the kent source utilities on your > computer to use our genePredToGtf program to convert this file: > http://hgdownload.cse.ucsc.edu/goldenPath/strPur2/database/refFlat.txt.gz to > GTF" > > Regardig this solution, is it possible to add the program genePredToGtf to > the following location? > > http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/ > > Eventhough I have really tried, I have not been able to install the UCSC > genome browser in my computer, running Ubuntu. > > That would be greatly appreciated. > > Thanks, > Fernando > > > > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
