Hi, The problem with the truncated table with GTF format still persists, at least for btau4 genome. I saw it was addressed a couple of times in this list.
One suggested solution was: "One way would be to use the table browser to export the file as a BED to Galaxy and then use Galaxy's BED-to-GFT converter. " However Galaxy has a BET-to-GFF converter, not a BED-to-GTF converter. And the other solution was: "Alternatively, you could install the kent source utilities on your computer to use our genePredToGtf program to convert this file: http://hgdownload.cse.ucsc.edu/goldenPath/strPur2/database/refFlat.txt.gz to GTF" Regardig this solution, is it possible to add the program genePredToGtf to the following location? http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/ Eventhough I have really tried, I have not been able to install the UCSC genome browser in my computer, running Ubuntu. That would be greatly appreciated. Thanks, Fernando _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
