Dear Thomas, For newbie questions, the archived mailing list questions are a great resource! To get to this from the home page click on "Contact", enter a search term for "Search the Genome mailing list archives:" and click on "submit".
Here is a previously answered mailing list question that should help you: https://lists.soe.ucsc.edu/pipermail/genome/2009-April/018677.html Information on the hg19 (GRCh37) assembly can be found on the gateway page: http://genome.ucsc.edu/cgi-bin/hgGateway?org=Human&db=hg19 The hg19(GRCh37) assembly was created by The Genome Reference Consortium (http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/)and is used by UCSC, Ensembl and NCBI. Hope this helps! Please contact the mailing list if you have further questions. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ----- Original Message ----- From: "Thomas Juettemann" <[email protected]> To: [email protected] Sent: Thursday, January 13, 2011 6:38:25 AM Subject: [Genome] Intron/Exon boundaries Hello all, again one of those newbie questions. I was wondering if you could give me some background information about intron/exon boundaries. I am looking for something on UCSC site that is similar to this: http://www.ensembl.org/das/Homo_sapiens.GRCh37.transcript/features?segment=13:32889611,32973347 It seems to be possible by using the table browser, but is there also a way using DAS or via FTP? Also, are the genomic coordinates different between UCSC, Ensembl and NCBI? Thank you & Happy New Year! Thomas _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
