Hi there, I sent an email to Lynn Brazil, she kindly suggested to get in touch to you.
I am a MS student, bioinformatician candidate and working on genome assembly nowadays. I want to have some hints about genome assembly, of course i have done and doing researches, but since i got stucked with using various programs, it would be awesome if i could get some instructions. Right now i have some sff files generated from 454 seq.. While searching online, i found celera is a common used program.I did the converting to frg, installed celara and ran for first turn. I got some results but somehow can not read output. sourgeforge has some documentation but i can not understand or apply clearly. i sent an email to celera co., no respond. i contacted roche, asked if i can get a copy of Newbler but again no respond. after that i used cap3, but while i can not it read the .qual file, again i can not rely on the results. well, as you can see i am doing some work without knowing it for sure. it might be asked to you often, but what should i do? any other programs, or any hint on presents? any help will be greatly appreciated. Thank you.. Visam GÜLTEKİN Bioinformatics Lab, MSc Dep. of Mol. Bio. and Genetics Izmir High Technology Institute Gulbahce-35430, Izmir / Turkey _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
