Hi Visam, Sorry for the delay in responding. Our email alias is monitored by people who are ready to help with UCSC Genome Browser specific questions, so I don't really have any advice on the issues you are having. You may want to look to see if there is any helpful information on NCBI's website: http://www.ncbi.nlm.nih.gov/projects/genome/assembly/index.shtml
Good Luck! Greg Roe UCSC Genome Browser Group On 1/15/11 6:48 AM, Visam GULTEKIN wrote: > Hi there, > > I sent an email to Lynn Brazil, she kindly suggested to > get in touch to you. > > I am a MS student, bioinformatician candidate and working > on genome assembly nowadays. > > I want to have some hints about genome assembly, of course > i have done and doing researches, but since i got stucked > with using various programs, it would be awesome if i > could get some instructions. > Right now i have some sff files generated from 454 seq.. > While searching online, i found celera is a common used > program.I did the converting to frg, installed celara and > ran for first turn. I got some results but somehow can not > read output. sourgeforge has some documentation but i can > not understand or apply clearly. i sent an email to celera > co., no respond. i contacted roche, asked if i can get a > copy of Newbler but again no respond. > > after that i used cap3, but while i can not it read the > .qual file, again i can not rely on the results. > > well, as you can see i am doing some work without knowing > it for sure. it might be asked to you often, but what > should i do? any other programs, or any hint on presents? > any help will be greatly appreciated. > > Thank you.. > > Visam GÜLTEKİN > Bioinformatics Lab, MSc > Dep. of Mol. Bio. and Genetics > Izmir High Technology Institute > Gulbahce-35430, Izmir / Turkey > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
