Hello Xinmin, One of our developers had this to say about your question:
We don't have that information at the individual feature level. DGV curates published variants, sometimes altering coordinates from the original publication for uniformity/quality, and lifts variants forward to new assemblies (e.g. hg16 > hg18) but not backwards to older assemblies (e.g. no hg19 -> hg18). Unfortunately this means that you will have to contact DGV directly to determine the assembly in question. They can be reached at [email protected] Best regards, Pauline Fujita UCSC Genome Bioinformatics Group http://genome.ucsc.edu On 01/19/11 13:25, xinmin wrote: > My SNP comes from build36/hg18, and I made the track file of my CNV > result on ucsc genome browser selected the hg18 assembly, however, when > I compare withe DGV at the genome browser, How can I know whether the > DGV data is coming from hg18 or hg16 or others? Are they the same with > mine (hg18)? > > thanks > > xinmin > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
