Dear UCSC team, I tried to do a liftover from hg18 to panTro2 using GATK and the hg18ToPanTro2.over.chain file downloaded from http://hgdownload.cse.ucsc.edu/goldenPath/hg18/liftOver/ In the above mentioned file, chain ID '18' is defined multiple times which results in an error when running GATK's liftover. Thus, I was wondering whether it is intentional that ID '18' is used multiple times?
Any advice is greatly appreciated. Thank you for your help in advance. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
