Hi Carlos, We have added this list to our list of requested liftOver files, but it will likely be some time before it is available. In the meantime, I recommend that you do a "double-lift" from D. pseudobscura to D. melanogaster and then from D. melanogaster to D. persimilis.
Please don't hesitate to contact the mail list again if you have any further questions. Katrina Learned UCSC Genome Bioinformatics Group Carlos A. MacHado wrote, On 1/21/2011 1:05 PM: > Hello, > > I am conducting comparisons between Drosophila pseudobscura and D. persimilis > and I wonder if there is a way to get LiftOver files to do the coordinate > conversion between these two genomes. Currently, there are only LiftOver > files for pseudoobscura-melanogaster and for persimilis-melanogaster. I have > been told that generating those files myself would be tremendously > complicated. As you suggest to contact you in case files are not available I > wonder if you have a pipeline in place to easily generate them and make them > available (they would be very useful for several of us in the community). > > Many thanks for any help you could provide and best regards, > > Carlos A. Machado > University of Maryland > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
