Hi Dianna, Thank you for your email. We will add this new assembly to our list of assemblies to update. The project manager here will be in touch with you soon.
-- Brooke Rhead UCSC Genome Bioinformatics Group On 02/07/11 13:25, Dianna Fisk wrote: > Hello, > > I am emailing to let you know that the Saccharomyces Genome Database (SGD) has just released a whole genome sequence update for the Saccharomyces cerevisiae reference sequence. We anticipate that this release will serve as a stable reference for the foreseeable future and hope that updates to this sequence will be exceedingly rare. > > Because UCSC is such a popular and useful resource, we would very > much encourage you to update your S. cerevisiae sequence accordingly. The new sequences and annotation are available on our download site: > http://downloads.yeastgenome.org/genome_release/r64/ > > All 16 S. cerevisiae chromosomes are changed as part of this update, but the mitochondrial genome sequence remains the same. As a consequence of these changes, 252 individual annotated features are altered (please see below). No features were added or deleted. This summary is relative to the last version at SGD (01-05-2010); there would be a few additional changes relative to the latest version currently available at UCSC (sacCer2, June 2008). > > We would be happy to assist you in this process in any way. Please don't hesitate to ask if you need any more information or data. If I should be talking to someone else in your group about this update, please let me know. > > Regards, > > -Dianna > > > > The vast majority of annotated features remain unchanged at the nucleotide > level. The following is a list of the changed features, broken down by > feature type (#changed/#total feature type). > 13/337 ARSes > 1/383 long terminal repeat > 1/50 retrotransposon > 2/89 transposable element genes (and corresponding exons and/or introns) > 5/32 telomeres (changes in: 1 X element combinatorial repeat, 2 X element > core sequences, and 2 Y' elements) > 2/15 ncRNAs (and corresponding noncoding exons) > 2/299 tRNAs (and corresponding noncoding exons) > 1/24 5’ UTR introns > 225/6607 protein coding ORFs (and corresponding exons and/or introns) > -------------------------- > 252/8093 changed features > > > > **************************************************************** > Dianna Fisk, Ph.D., Database Curator > Saccharomyces Genome Database > Stanford University Medical Center > Department of Genetics > 1501 California Ave, Rm 2C412B > Palo Alto, CA 94304-5577, USA > phone: (650) 725-8956 > email: [email protected] > http://www.yeastgenome.org/index.html > ***************************************************************** > > > > > > > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
