Hi David, This previous mailing list question should be able to help you:
https://lists.soe.ucsc.edu/pipermail/genome/2005-March/006938.html I hope this information is helpful. Please feel free to contact the mail list again if you require further assistance. Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group On 2/8/11 2:37 PM, David Lyon wrote: > 1944 NM_005649 chr5 - 178138521 178157703 178139060 > 178156023 5 178138521,178152376,1 > 78153999,178155990,178157556, > 178140622,178152472,178154126,178156074,178157703, 0 ZNF354A cmpl > cmpl 1,1,0,0,-1, > > > In the above example the gene NM_005649 is located on the negative strand and > so why is the transcriptional start site listed as "178138521" should it not > be "178157703" ? Since this gene is located on the -ve strand and thus > transcription should occur in the 5 --> 3 direction on the negative strand, > therefore should transcription start at "178157703" > > > Or is there something I am missing? > > Thanks > > > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
