Hi Vishnu, When you use the "Mask repeats" in the the "Get DNA" too, it does highlight low complexity repeats.
Please don't hesitate to contact the mail list again if you have any further questions. Katrina Learned UCSC Genome Bioinformatics Group Mishra, Vishnu wrote, On 02/10/11 16:41: > Hi, > > > > The question I have is that when I use the repeat filter in Get DNA tool, > does it highlights all the repeats including low complexity repeats? I do not > need to know the low complexity repeats per se...just want to mask them or > highlight them together with all other repeats in the sequence so that I do > not design PCR primers in those regions. It appears that the tool currently > highlights repeats other than low complexity repeats. Is that correct? Is > there another easy way to apply filter for low complexity repeats. > > > > Thanks > > > > Vish > > > Vishnu Mishra > Senior Scientist, Diagnostic Assay Development > Illumina, Inc. > 9885 Towne Centre Drive > San Diego, CA 92121 > Tel: 858-246-8813 > E-mail: [email protected]<mailto:[email protected]> > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
