Good Morning Sathish: The chain and net files for these alignments are not in an axtNet/ subdirectory since they are not separated into separate files by chromosome. All the alignments you need are in single files in these directories. For example:
ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer6/vsXenTro2/danRer6.xenTro2.net.gz ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer6/vsXenTro2/danRer6.xenTro2.net.axt.gz ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer6/vsXenTro2/danRer6.xenTro2.all.chain.gz See also, the other directories fot the same set of files: ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer6/vsHg19/ ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer6/vsMm9/ ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer6/vsOryLat2/ ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer6/vsTetNig2/ There will also soon be new chain and net alignments on the next version of Zebrafish in danRer7. --Hiram Sankarapandian, Sathish Gopi (Cognizant) wrote: > I am Sathish from AstraZeneca Support team. Currently we are upgrading > the Zebrafish Genome and we are having a facing a problem with the net > files. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
