Hi Jinyan,
Please see the "Display Conventions and Configuration" section of the
UCSC Genes track description for information about the color, which you
can get to by pressing on the 'mini-button' to the left of the actual
track display, or by clicking on the hyperlinked track name in the track
controls (below the display). From the description:
* Black -- feature has a corresponding entry in the Protein Data
Bank (PDB)
* Dark blue -- transcript has been reviewed or validated by either
the RefSeq, SwissProt or CCDS staff
* Medium blue -- other RefSeq transcripts
* Light blue -- non-RefSeq transcripts
Please contact the mail list again if you have any further questions.
Katrina Learned
UCSC Genome Bioinformatics Group
Jinyan Huang wrote, On 03/04/11 09:23:
> Dear expert,
> When I browse the gene region on ucsc, I found some region are
> different in color in different isoform. But I cannot understand what
> is the different, as shown in the attachment. Some exon color
> saturation is higher than others. And some exon is higher than others.
> What is the meaningful?
> Thank you very much in advance.
> Jinyan
>
> ------------------------------------------------------------------------
>
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