Hi,
The liftOver program is expecting to see a command like:
usage:
liftOver oldFile map.chain newFile unMapped
. . . you are missing the last argument, "unMapped," which will be used
to record the coordinates that were not successfully lifted.
--
Brooke Rhead
UCSC Genome Bioinformatics Group
On 03/11/11 23:40, [email protected] wrote:
> Hi,
> I used "liftOver" as below,
>
> "./liftOver alltrans.bed mm5ToMm8.over.chain newfile.bed"
>
> but only the information about the use of "liftOver" were shown, just
> as I type "./liftOver" on the
> command line
> Would you like to tell me what's wrong with it?
>
> _______________________________________________
> Genome maillist - [email protected]
> https://lists.soe.ucsc.edu/mailman/listinfo/genome
_______________________________________________
Genome maillist - [email protected]
https://lists.soe.ucsc.edu/mailman/listinfo/genome
