Hi, I am having a problem using the netToAxt utility of Jim Kent. I used LASTZ to create pairwise whole genome alignments, which were subsequently chained and netted using axtChain, chainMergeSort, chainPreNet, and chainNet. I am trying to convert the nets and chains to the axt pairwise alignment format, but when I run them through the netToAxt utlity, I get the following kind of error:
chainId 273107809, can only handle up to 268435456 Is there any way of getting around this problem? It seems a little arbitrary that the program can't handle IDs larger than 268435456. Many thanks in advance for your help, Chris _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
