Hi Chris, The netToAxt utility has this hardwired constraint:
#define maxChainId (256*1024*1024) You will need to change the limit to whatever you need it to be. Hope this helps. If you have further questions, please contact the mailing list. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ----- Original Message ----- From: "Chris Rands" <[email protected]> To: [email protected] Sent: Thursday, April 7, 2011 6:19:58 AM Subject: [Genome] netToAxt Utility Problem-- chainId too high Hi, I am having a problem using the netToAxt utility of Jim Kent. I used LASTZ to create pairwise whole genome alignments, which were subsequently chained and netted using axtChain, chainMergeSort, chainPreNet, and chainNet. I am trying to convert the nets and chains to the axt pairwise alignment format, but when I run them through the netToAxt utlity, I get the following kind of error: chainId 273107809, can only handle up to 268435456 Is there any way of getting around this problem? It seems a little arbitrary that the program can't handle IDs larger than 268435456. Many thanks in advance for your help, Chris _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
