Hi Anton, The MOE430 2.0 array is an updated version of the MOE430 array which means this data isn't currently available on our site, but there are plans to eventually have this available. In the mean time, you can find probeset coordinates for the MOE430 2.0 under the NetAffx Analysis Center at affymetrix.com.
Hope this helps! Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ----- Original Message ----- From: "Anton Kratz" <[email protected]> To: "UCSC Genome Browser Help Desk" <[email protected]> Sent: Thursday, April 7, 2011 1:40:57 AM Subject: [Genome] coordinates of probesets for the Affymetrix GeneChip Mouse Genome 430 2.0 Array: use affyMOE430? Dear UCSC team, I have a couple of thousand probe set identfiers for Affymetrix GeneChip Mouse Genome 430 2.0 Array. What I need are the coordinates of the probesets on the mouse genome assembly mm9 in bed-format. I tried to use the table "affyMOE430" from the UCSC Table browser, but ran into issues with missing identifiers. Can I use the table "affyMOE430" to get the coordinates of all probesets of the 430 2.0 array? I thought that the 430 2.0 is just a combination of the 430 A and the 430 B, maybe I'm wrong?! If not, is there a separate table for the 430 2.0? I read in an email in this list from April 2010 that such a table where in preparation ( https://lists.soe.ucsc.edu/pipermail/genome/2010-April/021997.html), but can not find it. If not, does anyone know how I can get coordinates for the probesets of the 430 2.0? Does Affymetrix provide this info? (I am not a customer of Affy, though) Thank you very much, Anton _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
