Dear UCSC team, I have a couple of thousand probe set identfiers for Affymetrix GeneChip Mouse Genome 430 2.0 Array.
What I need are the coordinates of the probesets on the mouse genome assembly mm9 in bed-format. I tried to use the table "affyMOE430" from the UCSC Table browser, but ran into issues with missing identifiers. Can I use the table "affyMOE430" to get the coordinates of all probesets of the 430 2.0 array? I thought that the 430 2.0 is just a combination of the 430 A and the 430 B, maybe I'm wrong?! If not, is there a separate table for the 430 2.0? I read in an email in this list from April 2010 that such a table where in preparation ( https://lists.soe.ucsc.edu/pipermail/genome/2010-April/021997.html), but can not find it. If not, does anyone know how I can get coordinates for the probesets of the 430 2.0? Does Affymetrix provide this info? (I am not a customer of Affy, though) Thank you very much, Anton _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
