Hi, Heather,
Looking at all the datasets we have on the public servers and on other
sets only in our development area, I do not see any SNPs from any source
that have a pair of Ts at this location. All of the SNPs are actual
=Single= Nucleotide Polymorphisms (despite the fact that dbSNP has some
that are multi-nucleotide "SNPs"). We have only a single T or a single C
at this location.
We do not have all the SNPs in the 1000 Genomes Project yet, but only
those that have been deposited in dbSnp and released in Release 132.
I suggest you contact 1000G directly.
Best wishes to you.
Nice to hear from you.
--b0b kuhn
ucsc genome bioinformatics group
On 4/11/2011 11:50 AM, Heather Trumbower wrote:
> Greetings, former colleagues. I hope y'all are well. :-)
>
> I am seeking to find a published reference sample which is TT (positive
> strand) for rs11170164.
> I have searched HapMap and Coriell, and am about to tackle 1000 genomes.
> In the absence of finding an available sample, we will need to synthesize an
> oligo to simulate TT.
>
> Any tips/suggestions you might have are appreciated. Thanks.
>
> Heather Trumbower
> Bioinformatics Scientist
> Navigenics, Inc.
>
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