Hello Pete, The gap track contains the data you are looking for. You can read more about it on the description page here:
http://genome.ucsc.edu/cgi-bin/hgTrackUi?g=gap&hgTracksConfigPage=configure also accessible by clicking on the blue/gray bar to the left of the main display or above the track pulldown menu. If you want to download the gap track as a bed file you can do so via the Table Browser (http://genome.ucsc.edu/cgi-bin/hgTables). After selecting your assembly of interest select: group: Mapping and Sequencing Tracks track: Gap table: gap output format: BED - browser extensible data Once you click on "get output" this will take you to a menu where you can specify what to include and how you want your BED file formatted. Hopefully this information was helpful and answers your question. If you have further questions or require clarification feel free to contact the mailing list at [email protected]. Regards, Pauline Fujita UCSC Genome Bioinformatics Group http://genome.ucsc.edu On 4/6/11 1:31 PM, Pete Shepard wrote: > Hello UCSC Browser, > > I am wondering if there exists a list say a bed file of unsequenced regions > of hg19? > > Thanks, > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
