Thanks, Mary, for your suggestions. Misha ________________________________________ From: Mary Goldman [[email protected]] Sent: Tuesday, April 12, 2011 5:43 PM To: Misha Bilenky Cc: [email protected] Subject: Re: [Genome] Mappability wig files
Hi Misha, First download the bigWig file and then use our bigWigToWig program to convert it to a wig file. You can either download the bigWigToWig program here: http://hgdownload.cse.ucsc.edu/admin/exe/ or you can install the kent source utilities to make the program yourself. You can find instructions about downloading and installing kent source utilities here: http://hgdownload.cse.ucsc.edu/downloads.html#source_downloads and here: http://genome.ucsc.edu/admin/jk-install.html, with the source code download residing here: http://hgdownload.cse.ucsc.edu/admin/jksrc.zip. I hope this information is helpful. Please feel free to contact the mail list again if you require further assistance. Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group On 4/11/11 10:44 PM, Misha Bilenky wrote: > How is it possible to obtain mappability wig files for mm9? > When I looked in the annotation database, e.g. the > crgMapabilityAlign50mer.txt.gz file contains just a part of URL to the bigWig > file. > Thank you in advance for your help, > > Misha Bilenky > Genome Sciences Center > Vancouver, Canada > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
