Hello, I am having a y-line location problem with a custom track I have created, but only at a particular zoom level.
If you please take a look at the following link, you will see a bar exceeding the 7.3 y-line mark - which is incorrect. The value is actually 6.5 or so. But if you zoom in or out from there it is correctly below the 7.3 y-line. This is using the bigbed format pulling datapoints from our server here at the institute. You will first need to load the tracks: http://genome.ucsc.edu/cgi-bin/hgTracks?org=human&db=hg18&position=chr6&hgt.customText=http://xgene.molgen.mpg.de/ucsc/pdgenetracks.txt Then the specific location and zoom level that has a problem is: http://genome.ucsc.edu/cgi-bin/hgTracks?insideX=118&revCmplDisp=0&hgsid=192883729&hgt_doJsCommand=&hgt.out2=+3x+&position=chr6%3A32583705-32592704 Thank you in advance for your help with this issue! Leif On Wed, 29 Sep 2010 20:27:00 +0200, Leif Schjeide <[email protected]> wrote: > Hello, > > I have two custom tracks that I would like to display with two other > listed tracks... > > I specify the priority of my custom tracks as 1 and 2, followed by pack > knownGene and dense gwasCatalog. > > All tracks show up - almost as expected. > > The problem is that my custom tracks are the third and fourth tracks > listed instead of the first and second. > > I tried playing around with the group field within my custom track > definition, either setting "user" or "x" or "test" because the notes > mentioned this had something to do with window positioning of the > tracks. However the different values had no effect. > > In case it makes any difference I have a bigBed type and a bigWig type > as my two tracks. > > I am accessing it as follows: (feel free to test for yourself) > > http://genome.ucsc.edu/cgi-bin/hgTracks?org=human&position=chr4&hgt.customText=http://xgene.molgen.mpg.de/ucsc/testbb.txt > > testbb.txt: > > track type=bigWig name="P-Value" description=" " visibility=full > color=50,50,50 altColor=90,90,90 gridDefault=on viewLimits=0.0:20.0 > yLineMark=7 yLineOnOff=on autoScale=off priority=2 group=user > bigDataUrl=http://xgene.molgen.mpg.de/ucsc/test.bw > > track name="PDGene" type=bigBed description="Parkinson's Disease > Meta-Analyses Results" color=21,68,6 itemRgb="On" visibility=pack > priority=1 group=user bigDataUrl=http://xgene.molgen.mpg.de/ucsc/test.bb > > browser pack knownGene > browser dense gwasCatalog > > > > Thanks in advance for any assistance! > > Leif _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
