Hi Assaf, Thank you for your email. This confusing error message is on our list of things to fix. We apologize for any inconvenience it caused.
Please feel free to contact the mail list ([email protected]) again if you have any further questions. Katrina Learned UCSC Genome Bioinformatics Group Assaf Gordon wrote, On 04/22/11 07:58: > Hello, > > When uploading a bedgraph custom track, and having a wrong chromosome name on > the second line, the error message says:"Unrecognized format type=bedGraph > line 2 of custom track" . > > This is slightly confusing, causing the user to troubleshoot the wrong > problem... > > When a bad chromosome name is on the third (or later) line, the error message > is more understandable. > > Examples (paste these to hg19 which doesn't have "chr2L"): > > This track (second line is invalid chromosome): > ==== > track type=bedGraph > chr2L 1000 2000 10 > chr2L 2000 3000 10 > ==== > Gives this error: > "Unrecognized format type=bedGraph line 2 of custom track" > > > This track (second line is valid chromosome, third line is invalid > chromosome): > ==== > track type=bedGraph > chr2 1000 2000 10 > chr2L 1000 2000 10 > ==== > Gives this error: > "Error line 3 of custom track: chr2L not a recognized sequence (note: > sequence names are case sensitive)" > > > Regards, > -gordon > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
