Hello, When uploading a bedgraph custom track, and having a wrong chromosome name on the second line, the error message says:"Unrecognized format type=bedGraph line 2 of custom track" .
This is slightly confusing, causing the user to troubleshoot the wrong problem... When a bad chromosome name is on the third (or later) line, the error message is more understandable. Examples (paste these to hg19 which doesn't have "chr2L"): This track (second line is invalid chromosome): ==== track type=bedGraph chr2L 1000 2000 10 chr2L 2000 3000 10 ==== Gives this error: "Unrecognized format type=bedGraph line 2 of custom track" This track (second line is valid chromosome, third line is invalid chromosome): ==== track type=bedGraph chr2 1000 2000 10 chr2L 1000 2000 10 ==== Gives this error: "Error line 3 of custom track: chr2L not a recognized sequence (note: sequence names are case sensitive)" Regards, -gordon _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
