Hi Hiram,
Thank you for your quick response. Actually If I compare with the danRer6 and danRer7 I could able to see that chromosome level fasta entries are not available in the latest version. I have highlighted the same in the contents. Can you please let us know when can we expect the chromosome level fasta entries for the version of danRer7? ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer6 <DIR> ..02/24/11 03:09AM [GMT] <DIR> . <DIR> .. <ftp://hgdownload.cse.ucsc.edu/> 02/24/11 03:09AM [GMT] <DIR> . <ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer6/> 05/11/11 07:30AM [GMT] <DIR> .. <ftp://hgdownload.cse.ucsc.edu/goldenPath/> 05/10/11 07:37PM [GMT] <DIR> bigZips <ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer6/bigZips/> 01/26/10 12:00AM [GMT] <DIR> chromosomes <ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer6/chromosomes/> 05/16/11 03:05PM [GMT] <DIR> database <ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer6/database/> 02/23/11 07:58PM [GMT] <DIR> liftOver <ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer6/liftOver/> 02/24/11 10:18PM [GMT] <DIR> multiz6way <ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer6/multiz6way/> 07/13/10 12:00AM [GMT] <DIR> phastCons6way <ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer6/phastCons6way/> 12/22/09 12:00AM [GMT] <DIR> vsGasAcu1 <ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer6/vsGasAcu1/> 12/17/09 12:00AM [GMT] <DIR> vsHg19 <ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer6/vsHg19/> 12/18/09 12:00AM [GMT] <DIR> vsMm9 <ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer6/vsMm9/> 12/17/09 12:00AM [GMT] <DIR> vsOryLat2 <ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer6/vsOryLat2/> 12/17/09 12:00AM [GMT] <DIR> vsSelf <ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer6/vsSelf/> 09/18/09 12:00AM [GMT] <DIR> vsTetNig2 <ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer6/vsTetNig2/> 12/23/09 12:00AM [GMT] <DIR> vsXenTro2 <ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer6/vsXenTro2/> ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer7 03/08/11 09:26PM [GMT] <DIR> . <ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer7/> 05/11/11 07:30AM [GMT] <DIR> .. <ftp://hgdownload.cse.ucsc.edu/goldenPath/> 05/10/11 07:39PM [GMT] <DIR> bigZips <ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer7/bigZips/> 05/16/11 03:12PM [GMT] <DIR> database <ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer7/database/> 03/08/11 09:24PM [GMT] <DIR> liftOver <ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer7/liftOver/> 01/19/11 08:32PM [GMT] <DIR> multiz6way <ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer7/multiz6way/> 04/04/11 08:36PM [GMT] <DIR> multiz8way <ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer7/multiz8way/> 12/21/11 09:52PM [GMT] <DIR> vsFr2 <ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer7/vsFr2/> 12/17/11 10:34PM [GMT] <DIR> vsGasAcu1 <ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer7/vsGasAcu1/> 12/20/11 07:32PM [GMT] <DIR> vsHg19 <ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer7/vsHg19/> 12/17/11 10:50PM [GMT] <DIR> vsMm9 <ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer7/vsMm9/> 12/17/11 10:45PM [GMT] <DIR> vsOryLat2 <ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer7/vsOryLat2/> 03/08/11 09:28PM [GMT] <DIR> vsPanTro3 <ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer7/vsPanTro3/> 12/17/11 08:33PM [GMT] <DIR> vsTetNig2 <ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer7/vsTetNig2/> 12/18/11 07:58AM [GMT] <DIR> vsXenTro2 <ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer7/vsXenTro2/> Warm Regards, Sathish Gopi S Cognizant Support Analyst - Bio-Target Phone : +91 44 3921 8022 Ex # 448022 EMail : [email protected] -----Original Message----- From: Hiram Clawson [mailto:[email protected]] Sent: 16 May 2011 18:15 To: Sankarapandian, Sathish Gopi (Cognizant) Cc: [email protected]; Sayana, Raghavendra (Cognizant); Chhogalal, Shravan (Cognizant); Jeyaprakash, Vignesh (Cognizant); Muthusamy, Murugesan (Cognizant); Kaliyamoorthi, Anjugam (Cognizant) Subject: Re: [Genome] danRer7 for ZebraFish Zv9 Release Good Morning: Can you please clarify ? All of the data for Zv9 is available at the FTP location you specify. What particular bit of data are you seeking that is not available there ? --Hiram Contents of goldenPath/danRer7/ drwxrwxr-x 2 7 Dec 17 12:33 vsTetNig2 drwxrwxr-x 2 7 Dec 17 14:34 vsGasAcu1 drwxrwxr-x 2 7 Dec 17 14:45 vsOryLat2 drwxrwxr-x 2 7 Dec 17 14:50 vsMm9 drwxrwxr-x 2 7 Dec 17 23:58 vsXenTro2 drwxrwxr-x 2 7 Dec 20 11:32 vsHg19 drwxrwxr-x 2 7 Dec 21 13:52 vsFr2 drwxrwxr-x 3 3 Jan 19 12:32 multiz6way drwxrwxr-x 2 11 Mar 8 13:24 liftOver drwxrwxr-x 2 7 Mar 8 13:28 vsPanTro3 drwxrwxr-x 3 8 Apr 4 13:36 multiz8way drwxrwxr-x 2 24 May 10 12:39 bigZips drwxrwxr-x 2 161 May 16 08:12 database Sankarapandian, Sathish Gopi (Cognizant) wrote: > Hi Hiram, > > Is there any update with the danRer7? When I verified with the below URL > "ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer7"; for the same, there > were no chromosome specific fasta files available for the same version. > > Can you please let us know when will this be this data available in near > feature? Thank You. > > Warm Regards, > Sathish Gopi S > Cognizant Support Analyst - Bio-Target > > Phone : +91 44 3921 8022 Ex # 448022 > EMail : [email protected] _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
